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Molecular Dynamics and Monte Carlo

Exercises

1. Basic Concepts of Molecular Dynamics and Monte Carlo Simulations
2. Statistical Thermodynamics and the Boltzmann Distribution
- 2.1. Statistical Thermodynamics and the Boltzmann Distribution
- 2.2. Boltzmann Distribution Harmonic Oscillator
3. Monte Carlo Simulations and the Photon Gas
4. Introduction to Molecular Dynamics
- 4.1. Theory
- 4.2. MD simulation from scratch
5. Classical Molecular Dynamics (MD) Simulations
- 5.1. Theory
- 5.2. ToyMD
6. Properties from Molecular Dynamics

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By Laboratory of Computational Biochemistry and Chemistry - Ursula Roethlisberger